PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G044800.2
Common NameB456_007G044800
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 549aa    MW: 60299.4 Da    PI: 7.585
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G044800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11366408754
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Gorai.007G044800.2 366 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 408
                         79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58359408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-16362425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14365414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-9365408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.28E-12366412No hitNo description
Gene3DG3DSA:4.10.280.101.4E-15366420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.56E-6479520No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MLSRVNSGLV WMEGTKEDEH SSSWNRTNGN NNNNNNNSVI MENKEMMGSS LSSFKSMLDD  60
EWYVPNNGIS SHHDIRELSF SPNLGDHQDN LLLHHQQQQR PVDSSSSCSP SSSVFNNIDP  120
SQVQFFLQPK PSLSSFLNVV SNNPLDHGFD LGEIGFLDNQ ATTNATTLLN REYTRVLGGF  180
TDLSPGNQLD TANSCPETQF SGSRVVQLTE NGGGFAGFQG FNENPGNPLF LNRSKLLRPL  240
DSFPSVGAQP TLFQKRAALR KNLADNGGNF GVLSGGNINA PSGTVGDKGK KEMNKENEKK  300
KNYNRDELED VSIDGSALNY DSDEFTENNK VEEALKNGGN TSNANSTVTG GDQKGKRKGL  360
PAKNLMAERR RRKKLNDRLY MLRSVVPKIS KMDRASILGD AIEYLKELLQ RINDLHNELE  420
SNPGSSSLTP TTSFHPLTPT PATLPCRIKD ELCPSSLPSP NGQPARVEVR LREGKAVNIH  480
MFCGRRPGLL LSTMRALDSL GLDIQQAVIS CFNGFAMDIF RAEVQSLTII NFLISFLNKL  540
RSSNKGKA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1355373KRKGLPAKNLMAERRRRKK
2367374ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7514260.0KC751426.1 Gossypium hirsutum bHLH transcription factor (bHLH2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489049.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-121ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0D2T8U70.0A0A0D2T8U7_G
STRINGPOPTR_0015s11650.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-110bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]